PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16393.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 420aa    MW: 47128.1 Da    PI: 7.3227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16393.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-3188191198
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  KHN16393.1  88 FEKVATPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDlYRHRLY 186
                 89***************************966778999*************************************************655666666666 PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 + + r
  KHN16393.1 187 IDWKR 191
                 66655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-4180196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-2985191IPR015300DNA-binding pseudobarrel domain
CDDcd100178.88E-2786175No hitNo description
SMARTSM010191.8E-2288193IPR003340B3 DNA binding domain
PfamPF023621.4E-2888192IPR003340B3 DNA binding domain
PROSITE profilePS5086313.94488193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MELMQQVKGN YSDSREEEEE EEAAAITRES ESSRLHQQDT ASNFGKKLDL MDLSLGSSKE  60
EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA EKYFPLDSST  120
NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGLGDL  180
YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH FHHHLNYNNL  240
FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG RGSNIVPMII  300
DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE LSSGSAAHVT  360
TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD LDPSLQYHRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-488519211117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-147AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520889.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_006577361.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_006577362.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_006577363.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_006577364.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_014629549.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827991e-80NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0B2Q8P50.0A0A0B2Q8P5_GLYSO; B3 domain-containing transcription factor NGA1
TrEMBLK7KH740.0K7KH74_SOYBN; Uncharacterized protein
STRINGGLYMA03G42301.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-65B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]